rs52418142 SNP Detail

Summary

• ID
  rs52418142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119358658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGGACCAAGA ACTCCACTTC ACTGCTCCAG TGTGGATGCC
  AGCCAGAGAA ATAAGGCAAC AAAGCAAAGC AAAGCAAAGC AATGCAGAGC GGAGCGGAGC
  R
  GAGCAGAGCA GAGCAAAGCA AAGCAAAGCA ATGCAGAGCA GAGCGGAGCA GAGCAGAGCA
  AAGCAAAGCA AAGCAAAGCA ATGCAGAGCA GAGCGGAGCG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145815226	ENSMUSSNP4700962	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52418142					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119358658 () rs orientation: forward

Symbol	Name	Function Class
Acsm3	acyl-CoA synthetase medium-chain family member 3	1448 bp upstream
Gm74181	predicted gene, 74181	732 bp downstream
Rr654652	regulatory region 654652	1066 bp proximal
Rr654653	regulatory region 654653	1500 bp proximal
Tssr68754	transcription start site region 68754	1483 bp upstream
Tssr68755	transcription start site region 68755	1508 bp upstream
Tssr68756	transcription start site region 68756	1546 bp upstream
Tssr74499	transcription start site region 74499	1360 bp downstream