rs52418536 SNP Detail

Summary

• ID
  rs52418536
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98852297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTGTGT ATCCCAGCAC
  TGGGAAGCCG GGGATTGCAG CTAATTTGTG CCCACCCTGG ATATATAGTG TGATATCCTG
  TCTCAAAAAC CAAAAGAAAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA
  GAGAAGAGAG AAATAATATA CAAAGTAGTA CTTAATACTA GAGAGCTTTC TTTCTTTAGC
  K
  GTAATTCTCT CCCATCACCC CTCCGTGCCC GCCCCCCTAC CCCACCCTAC CTCACCCCAG
  AGCCTGTGTT ATTTTGTCCC TAGAAATGAG CCATCCTTTC TAATATGGAA TTCAGAAACT
  GTAAGGAGAA AGAATTGAGT TTAAAAACTA GCTCTTTGTG TGGGCTTGTA TTTCTCCAGT
  CTTTTTTTTT TTTTTGGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622724	NES17045862	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52418536					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622724	NES17045862	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98852297 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	965 bp upstream
Cpgi7685	CpG island 7685	700 bp distal
Gm49450	predicted gene, 49450	865 bp upstream
Gm56698	predicted gene, 56698	149 bp downstream
Rr370012	regulatory region 370012	1089 bp downstream
Rr404613	regulatory region 404613	645 bp downstream
Rr509236	regulatory region 509236	1149 bp distal
Rr509237	regulatory region 509237	876 bp distal
Rr509238	regulatory region 509238	756 bp distal
Rr509239	regulatory region 509239	223 bp distal
Rr509240	regulatory region 509240	778 bp proximal
Tssr132970	transcription start site region 132970	1342 bp downstream
Tssr132971	transcription start site region 132971	647 bp downstream
Tssr136334	transcription start site region 136334	897 bp upstream
Tssr136335	transcription start site region 136335	883 bp upstream
Tssr136336	transcription start site region 136336	856 bp upstream
Tssr136337	transcription start site region 136337	825 bp upstream
Tssr136338	transcription start site region 136338	809 bp upstream
Tssr136339	transcription start site region 136339	757 bp upstream
Tssr136340	transcription start site region 136340	740 bp upstream
Tssr136341	transcription start site region 136341	717 bp upstream
Tssr136342	transcription start site region 136342	1043 bp downstream
Tuba1a	tubulin, alpha 1A	915 bp upstream