rs52418974 SNP Detail

Summary

• ID
  rs52418974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31352432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTGCTC TACAAGAGTG
  AATTGGGGCG GGGGGGGGGA TGTTAAAAAA AAAGAGTGAA TTGGTTGGGT CAGTAATAAC
  ATATATACAA CACCCCTCCC CACAAAATGC TAACTTGGCT GCCAGCCATT GGAGAACATA
  GCACTATGGG TATATACCAT AAATGACATT TCTTCTTTGT AAAAAATGTT ACTACATTTA
  R
  TTACTTTGTG TGTGTGTGTT CTTATGTGTA TTTGTGTTTG TGTGTTTGTG TGGGTGTGTG
  TGTACACAGG GTGCACGTGG TGGGCCACTA ACAACTCAGG AGAGTTGGTT CTTTCCTTCT
  GCCATGTGGG GTCCTGGACT TTAGGTCTTT GGGCTTAGCA GCAAACACCA ATTCCCACAC
  CACAACATCA AGGTCCGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145456968	ENSMUSSNP3459549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss325358820	CHEV_17_31270403	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52418974					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31352432 () rs orientation: forward

Symbol	Name	Function Class
Rr341223	regulatory region 341223	within coordinates