CCAAATCCCA GCAACCACAT GGTGGCTCAC AACCATCGGT AATGGGATCT GACGCCCTCT TCTGGTGTAC CTGAAGACTG CAACAGCTTA CTCACATATA TAAAATAAAT ACATCTTAAA ACCAAAACCA AAACAACACA AAACAAAAAC AAGAAAAAGA AAAGAAAAAA GAAGAACCGA GCAGTAGTAG GTAAATGCTG K GGCAGTGGGT ATAGTTCAGT GCTAGGAAAC TTGTTCAGCT TGCACAGGGC CTCAAGCCCC ACACTTGCAC ATGAAATAAC ATAGAGTATT TATTGCAGTC TAAATATATG CTTTGCTAAA TGTTTTCTAT GGAAGGTTTA CAACAATTCC ATTATAAGTA CTCATAAAAT TCCCAGTTTA TGGGCAAGGG CCAAGAGCAC K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss63515164 | NES17007400 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs52418994 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss63515164 | NES17007400 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr15:55130846 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
D15Mit26 | DNA segment, Chr 15, Massachusetts Institute of Technology 26 | 1105 bp proximal | ||||||
D15Mit26.1 | DNA segment, Chr 15, Massachusetts Institute of Technology 26.1 | 1194 bp proximal | ||||||
Rr303058 | regulatory region 303058 | 46 bp distal | ||||||
Rr303059 | regulatory region 303059 | 1155 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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