rs52420223 SNP Detail

Summary

• ID
  rs52420223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37874752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCTGC CTCTGCCTCC
  TCTGCCTCCT CTGCCTCTGC CTCCTCTGCC TCTGCCTCCT CTGCCTCCTC TGCCTCCTCT
  GCCTCCTCTG CCTCCTCTGC CTCCTCTGCC TCCTCTGCCT CTGCCTCTGC CTCTGCCTCT
  GCCTCTGCCT CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT CAAGTTCCCA AGTTCTGAGA
  Y
  AAGGCCATAC ACCTGGCTAC TCATGGTTTT TGTTATTTGG GGGGCAAGGG GGTATCTGCA
  TACATGTCTT TTTGAGGGTG TCAGATGTCC TTCAGGTGTG TTACAGAGGT GCTACAGCAG
  GTGTTACAGA GAGTTGTGAT CTGCCATTTG GGTGATGGGA ATTGAAGCTG GGTCCTCTGG
  AGGAGCAGCT AGTACTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61764386	NES17699242	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52420223					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764386	NES17699242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37874752 () rs orientation: forward

Symbol	Name	Function Class
Rr271585	regulatory region 271585	1752 bp distal
Rr275856	regulatory region 275856	1648 bp proximal
Rr279067	regulatory region 279067	963 bp distal
Rr283303	regulatory region 283303	within coordinates