rs52420689 SNP Detail

Summary

• ID
  rs52420689
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:88900200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAAGAGT GAGATGCAGA AACTGAAGGC AGAGGTTGAG
  CTCATTATGG ACAAAGGGGA TGAGTTTGAG TTTCTGGAGG TGAGTTGTGG CTCCGGTGCT
  S
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TTTGTGTGTG TGTGTGTTCT GCCCATGTTC TGCCTAACA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783755	CHEV_11_88870688	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52420689					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88900200 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	126 bp proximal
Trim25	tripartite motif-containing 25	Intron
Tssr104065	transcription start site region 104065	1245 bp downstream
Tssr104066	transcription start site region 104066	1519 bp upstream
Tssr104067	transcription start site region 104067	1595 bp upstream