rs52421323 SNP Detail

Summary

• ID
  rs52421323
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83080010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAAAA GAAGGGAAGG
  AAGGAGAAAA GAAGGGAAGG AGGGAGGGAA GGAAGAAGTG AGGGAAAGAG GAAGGGAGAG
  GAAAGAAGCA AAAAGGAGAG AGGAAGAAAG GATGGAAGGT AGGAAGAGAG GGAAGGAAGG
  TAAAAGAAAG GAAAGGAGGG AGGGAGGAGG AGAGGAACTA TGTTGTAAGG GATATAGACA
  M
  TTGGTCATAC ATCATTCAAT TAGTATATAA CATAACCACT ATGTTGCTGA ACTGTAGGAC
  ATCAGGTGTG CAGTGGCTCG TCCAGATATC ACCAGTACCA GCATGTTAAG AGAGCAAAGC
  TGTGGCCATT CAAGGTCAAG AGAGGGTCTG TGAGATAGAT CTGGGAGTGA GGGTGGAGCA
  TGACTTTGTG TGTGAGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145303250	ENSMUSSNP5760524	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322735743	CHEV_8_84877280	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52421323					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83080010 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Rr400995	regulatory region 400995	1829 bp downstream
Rr666114	regulatory region 666114	1729 bp distal
Rr666115	regulatory region 666115	1936 bp distal
Tssr81943	transcription start site region 81943	27 bp downstream
Tssr81944	transcription start site region 81944	71 bp downstream
Tssr81945	transcription start site region 81945	114 bp downstream
Tssr81946	transcription start site region 81946	169 bp downstream
Tssr81947	transcription start site region 81947	952 bp downstream