rs52421573 SNP Detail

Summary

• ID
  rs52421573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61912953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAA CTTTGGAGCT AGGTGTGGTG GTTCATGCCT ATAATCCAAG GATATGGGAA
  GTTGAAGCAG GAGGATAAGC GTGAGTTCAA GGCCAGCCTT AGCTGTAGGC CAGTTGAACT
  ACAGCTTGTC TCAAAATTTA AATATCAGAA AAAAAGAAAA CAAACGAACA AACAGAAAAA
  W
  CAGATTAGCC TCAGTAGACT CCTGCTGACA ATTATGTTTT TAAAATGTAT CAGTTCTGTT
  TCATAATAGG CTGGCTGCAA GGTGAATCCT TTGTTCTGTC ACCAGAATTC TAGCCATGCC
  TGACCTTGTT TAACTTTGGA GATCAGAGCA GATAAGGGAT TTGAGGCAAT ATGGCTGTAG
  ATCACGAGCC TCGATGACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563377	NES15634421	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52421573					SNP	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563377	NES15634421	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61912953 () rs orientation: forward

Symbol	Name	Function Class
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	1028 bp downstream
Rr503089	regulatory region 503089	1707 bp distal
Rr503090	regulatory region 503090	1446 bp distal
Rr503091	regulatory region 503091	1868 bp proximal
Tssr131428	transcription start site region 131428	1842 bp downstream
Tssr131429	transcription start site region 131429	1812 bp downstream
Tssr134486	transcription start site region 134486	1950 bp upstream
Tssr134487	transcription start site region 134487	1932 bp upstream