rs52421699 SNP Detail

Summary

• ID
  rs52421699
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43801041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAGACTT CCTATGTTCT TATCACAAAC AAAACAGAAC
  AGAACAGAAC AGAACAAAAC AAAGCAGAAC AGAACAGAAC AGAACAGAAG GTATTACTCC
  A
  AAGCCCCCTG CCCCAGGGAG ATTAGTTAGG ATTCATGAAG AGAAACCCTT CCCTTTAGCC
  AGTATTTTTA TTCCCTACAG GCGTCTCAAA AACATTGTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148058951	ENSMUSSNP1293669	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52421699					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43801041 () rs orientation: forward

Symbol	Name	Function Class
4930552F14Rik	RIKEN cDNA 4930552F14 gene	within coordinates
Cpgi8279	CpG island 8279	383 bp distal
Gm46552	predicted gene, 46552	within coordinates
Gramd1c	GRAM domain containing 1C	within coordinates
Rr516233	regulatory region 516233	1026 bp distal
Rr516234	regulatory region 516234	397 bp distal
Tssr141154	transcription start site region 141154	853 bp upstream
Tssr141155	transcription start site region 141155	403 bp upstream
Zdhhc23	zinc finger, DHHC domain containing 23	887 bp upstream