rs52422424 SNP Detail

Summary

• ID
  rs52422424
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118533659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CTCACGTACT TGCTAAGAAG
  S
  AAATAGTGAA GGAAAGGGCA ACCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137041933	ENSMUSSNP7219067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323216707	CHEV_9_118613709	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52422424					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118533659 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688310	regulatory region 688310	934 bp proximal
Tssr87646	transcription start site region 87646	1232 bp downstream
Tssr87647	transcription start site region 87647	1206 bp downstream
Tssr87648	transcription start site region 87648	1187 bp downstream
Tssr87649	transcription start site region 87649	1145 bp downstream
Tssr87650	transcription start site region 87650	1103 bp downstream
Tssr87651	transcription start site region 87651	1079 bp downstream
Tssr87652	transcription start site region 87652	802 bp downstream