rs52423488 SNP Detail

Summary

• ID
  rs52423488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34519387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTGGCAT TAGATGATAG GCCAAGAGCA TAGAACTTTC
  CACAACCCCA AGTGGTTTAT GCACAGTGGG GAACAGTCTG ATGGGAAATG GAGCCTGACC
  R
  TGTTGTTACA AATAGTAATA CATATTTTAA ATAAGTACAT ATAAATATTT AGCATTGCTA
  TATACCTTAT ATATTACATT AAATATATAT TAATTTATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592552	NES16321586	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		A	A	A		G
ss322574618	CHEV_8_35115287	CHEVERUD	SCREENING_POP	f	SNP				G				G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52423488					SNP	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592552	NES16321586	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34519387 () rs orientation: forward

Symbol	Name	Function Class
Gm9951	predicted gene 9951	within coordinates
Gm40486	predicted gene, 40486	249 bp downstream
Gm40487	predicted gene, 40487	within coordinates
Rr661931	regulatory region 661931	1870 bp proximal