rs52423900 SNP Detail

Summary

• ID
  rs52423900
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC GGACAGAGCT AGGAGACACA
  S
  AGAGAGAGAG AGGTATGGAA GGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406542	CHEV_17_47865609	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52423900					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039585 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1325 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	90 bp upstream
Tssr5148	transcription start site region 5148	650 bp downstream
Tssr145003	transcription start site region 145003	1812 bp downstream
Tssr145004	transcription start site region 145004	72 bp upstream
Tssr145005	transcription start site region 145005	100 bp upstream
Tssr145006	transcription start site region 145006	109 bp upstream
Tssr145007	transcription start site region 145007	136 bp upstream
Tssr145008	transcription start site region 145008	170 bp upstream
Tssr145009	transcription start site region 145009	187 bp upstream
Tssr145010	transcription start site region 145010	590 bp upstream
Tssr145011	transcription start site region 145011	603 bp upstream
Tssr145012	transcription start site region 145012	615 bp upstream
Tssr145013	transcription start site region 145013	634 bp upstream
Tssr145014	transcription start site region 145014	1420 bp upstream
Tssr145015	transcription start site region 145015	1482 bp upstream
Tssr145016	transcription start site region 145016	1493 bp upstream
Tssr145017	transcription start site region 145017	1938 bp upstream
Tssr145018	transcription start site region 145018	1950 bp upstream
Tssr145019	transcription start site region 145019	1981 bp upstream
Tssr148459	transcription start site region 148459	136 bp downstream
Tssr148460	transcription start site region 148460	157 bp downstream
Tssr148461	transcription start site region 148461	196 bp downstream
Tssr148462	transcription start site region 148462	215 bp downstream
Tssr148463	transcription start site region 148463	618 bp downstream
Tssr148464	transcription start site region 148464	696 bp downstream
Tssr148465	transcription start site region 148465	1461 bp downstream
Tssr148466	transcription start site region 148466	1474 bp downstream
Tssr148467	transcription start site region 148467	1969 bp downstream
Tssr148468	transcription start site region 148468	2000 bp downstream