rs52424209 SNP Detail

Summary

• ID
  rs52424209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:68719127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCTCT TGTGCCCATA
  GTGCTCAAAA CATGTAAAGC CCATCACCAC CCTAGTCACT GTAAGAAAGA ACAGTGGCAA
  GAACCCATCT GCACAGGGCT TGCTTGTGGC TGTGTGTGTA CGTGTGGTTT GTGTGTGTAT
  GTGTGGTTTG TGTGTGTATG TGTGGTTTGT GTGTGTGTAC GCACAGGCAC GGCATATGGC
  K
  GAGCTGCAGC ATCTACGCAG CCAGCACACA GGATGTTGGG CATGTCCGCC ATCTGTCCTA
  CCTTTCTTCT TAGTGTCCGT CTTAATTTTC AAGATGACAC GGTGAGCTCG TTTATCAGCC
  AGCTGCAGCC TTTGGAGCAG TTCTTCTACC TCACGATCAC TGTTTGGACA GGTCACATTG
  AAGGAGTCTC CAGGTTGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61831523	NES17768317	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52424209					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61831523	NES17768317	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:68719127 () rs orientation: forward

Symbol	Name	Function Class
Mtrr	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	within coordinates
Rr1653	regulatory region 1653	520 bp upstream
Rr388642	regulatory region 388642	1874 bp downstream
Rr482077	regulatory region 482077	1207 bp distal
Rr482078	regulatory region 482078	1831 bp proximal
Tg(Tek-cre)12Flv	transgene insertion 12, Richard A Flavell	within coordinates