rs52425003 SNP Detail

Summary

• ID
  rs52425003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGAATTTCAT AAGCTCTATA TTTGTATTTA GGTTCCCTTT
  CTCTCTCTCT CTGTTTCTCT GTCTGTCTCT CTCTTTCTGT CTCTCTGTCT CTGTCTCTGT
  Y
  TCTGTCTCTT TCTCTCTCTC TCTCTCTCTC TCGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTCTCCTG AGAGGCTCTG CCAGTGCAAA TACAAATACA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147915693	ENSMUSSNP5222028	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
ss147928886	ENSMUSSNP768125	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52425003					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147937411	ENSMUSSNP3100049	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077385 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	within coordinates
Gm17019	predicted gene 17019	1579 bp downstream
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	1816 bp proximal
Rr121520	regulatory region 121520	1971 bp distal
Rr121523	regulatory region 121523	699 bp proximal
Rr121525	regulatory region 121525	1915 bp proximal
Rr128307	regulatory region 128307	within coordinates