rs52425522 SNP Detail

Summary

• ID
  rs52425522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91861620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAC ACAGAAAAAC CCTGTCTTGA
  M
  CCCCCCCCCC CAAAAAAAAA AAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145564061	ENSMUSSNP5824847	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52425522					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91861620 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	512 bp distal
Gm63829	predicted gene, 63829	514 bp downstream
Rr368579	regulatory region 368579	609 bp downstream
Rr667489	regulatory region 667489	1006 bp distal
Rr667490	regulatory region 667490	37 bp distal
Rr667491	regulatory region 667491	280 bp proximal
Rr667492	regulatory region 667492	690 bp proximal
Tssr82405	transcription start site region 82405	970 bp upstream
Tssr82406	transcription start site region 82406	954 bp upstream
Tssr82407	transcription start site region 82407	667 bp downstream
Tssr82408	transcription start site region 82408	695 bp downstream
Tssr82409	transcription start site region 82409	710 bp downstream