rs52425560 SNP Detail

Summary

• ID
  rs52425560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151337519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA GCTCATTTAC ATTTCCAATG
  Y
  TATACCAAAA GTCCCCCATA CCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SWR/J
ss639253456	FVB_NJ_1_153308898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	I/LnJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SWR/J
rs52425560					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639253456	FVB_NJ_1_153308898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151337519 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	262 bp downstream
Rr420294	regulatory region 420294	301 bp distal
Rr420295	regulatory region 420295	1077 bp proximal