rs52426055 SNP Detail

Summary

• ID
  rs52426055
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGAGGAAGG AGGCGTCAGT GTGTGTGTGT GTGTGTGTAT
  ACGTGTACGC ACTCGCGCGC TCGCCCTCTT GTCAGCCTCC CCCACTATCC TCTGGCATCT
  T
  TCCCCTTTAC CAGGCGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TACGTGTACG CACTCGCGCG CTCGCCCTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148686853	ENSMUSSNP3953197	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52426055					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	56 bp distal
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	209 bp downstream
Rr644901	regulatory region 644901	1152 bp distal
Rr644902	regulatory region 644902	1079 bp distal
Rr644903	regulatory region 644903	429 bp distal
Tmem147	transmembrane protein 147	534 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	425 bp downstream
Tssr65803	transcription start site region 65803	309 bp downstream
Tssr65804	transcription start site region 65804	262 bp downstream
Tssr65805	transcription start site region 65805	1106 bp upstream
Tssr71842	transcription start site region 71842	1231 bp upstream
Tssr71843	transcription start site region 71843	615 bp upstream
Tssr71844	transcription start site region 71844	567 bp upstream
Tssr71845	transcription start site region 71845	512 bp upstream