rs52426160 SNP Detail

Summary

• ID
  rs52426160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACTGAA CGAACCTAGA
  GCATATTGAT TCTGCTAGGC TGCCTGGCCA GTGAGCCCCA TGAATCCCCC TGTCTCTGCG
  TCCCCAGCTC TAGAATTACA CGCGTGAGCT ATTACACAGT GCCCAGCTAT TTACATGGAC
  ACTGAGGATC CAAAGTCGGG CCCTAATGCT GGCACCATAG CACTTCACCA GCTGAGCGCT
  Y
  GTCCCAGCCC TTCAGTCTGG GATTTTAAAA CAAAAACCTT TAAAACAAAA CATTTTTGTT
  TGTTTGTTTG TTTATAAGAA AAAAGTGAGG TTCAGGGGCC AGGTCAAAGC CTTGTTAGGG
  AATTCTGAGA CTCTCAAGCA AGTGCACCGT TGTGCTTTCT AAGATGACCC CAGGGGGTAG
  GTAATATGTG GAACATGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148241297	ENSMUSSNP4221735	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320608365	CHEV_2_165418585	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52426160					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1519 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1947 bp upstream
Rr569954	regulatory region 569954	848 bp proximal
Rr569955	regulatory region 569955	1457 bp proximal
Rr569956	regulatory region 569956	1958 bp proximal
Tssr21727	transcription start site region 21727	1924 bp upstream