rs52427045 SNP Detail

Summary

• ID
  rs52427045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66827849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGAGA AAGAAAGAAA
  GAAAGAGAGA GAGAGAGAGA GAGAGAGGGA GGGAGGGAGG GAGGGAGGGA GGGAGGGAGG
  GAGGGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA AAGAAAGAAA
  GAAAGAGAGG AGAGGGGAGA GAGGGGAGAG AGGGAGAAGA GAAGAGAAGA GAAGAGAAGA
  K
  AAGATAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAAAGATG
  TGGGAAGGCT TGTGCTACGA ACAGCTTATA AAATAGCGCC ACCTGAGACA GGTGACGGGA
  ACTTTGGCCA TAGAAGATGT AGAGATTTAG ATTTGGATTT AGTCTTTGCT AAGCCACTTC
  ACAGCTGTGT GAAGTCTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss377893220	MGP_WTSI_9_66768374	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs52427045					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377893220	MGP_WTSI_9_66768374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66827849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	624 bp distal
Rab8b	RAB8B, member RAS oncogene family	880 bp upstream
Rr368814	regulatory region 368814	981 bp downstream
Rr401489	regulatory region 401489	593 bp downstream
Rr681814	regulatory region 681814	390 bp distal
Rr681815	regulatory region 681815	1702 bp proximal
Tssr85773	transcription start site region 85773	1705 bp downstream
Tssr85774	transcription start site region 85774	1685 bp downstream
Tssr90295	transcription start site region 90295	1370 bp upstream
Tssr90296	transcription start site region 90296	857 bp upstream