rs52428349 SNP Detail

Summary

• ID
  rs52428349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115739044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGTAGGACT GAAACCTGAG TTTTCCCCCT CCCCCTTCCC
  CTCCTCCTTC CTCCTCCCCC TTCCTCTACT CCTTCCTCCT CCCTCTTCTT CCTCCTCCTT
  Y
  CTCCTCCCCC TTCCTCCTTC TCTCTCTGCT CCTCCCCCTT CTCTCCCTCC TCTGTTCTCT
  TCCTCCTCCT TTCTTTGGTG TTGGGAACCA AACCGACGGC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133573252	ENSMUSSNP4451712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52428349					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115739044 () rs orientation: forward

Symbol	Name	Function Class
Tmem40	transmembrane protein 40	within coordinates
Tssr58324	transcription start site region 58324	171 bp upstream
Tssr62532	transcription start site region 62532	239 bp downstream
Tssr62533	transcription start site region 62533	263 bp downstream