rs52428563 SNP Detail

Summary

• ID
  rs52428563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140426114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC ACGAACATGG TAAAACAGCA
  R
  CAGCAACAAC CACCAAACCA AAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147709677	ENSMUSSNP4136667	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52428563					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140426114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	710 bp proximal
Gm69527	predicted gene, 69527	328 bp downstream
Gm69529	predicted gene, 69529	1070 bp upstream
Rcc2	regulator of chromosome condensation 2	1738 bp upstream
Rr377298	regulatory region 377298	208 bp upstream
Rr603517	regulatory region 603517	580 bp proximal
Rr603518	regulatory region 603518	1248 bp proximal
Rr603519	regulatory region 603519	1749 bp proximal
Tssr39970	transcription start site region 39970	1063 bp upstream
Tssr39971	transcription start site region 39971	1132 bp upstream
Tssr39972	transcription start site region 39972	1161 bp upstream
Tssr39973	transcription start site region 39973	1183 bp upstream
Tssr39974	transcription start site region 39974	1532 bp upstream
Tssr39975	transcription start site region 39975	1668 bp upstream
Tssr39976	transcription start site region 39976	1684 bp upstream
Tssr39977	transcription start site region 39977	1799 bp upstream
Tssr44270	transcription start site region 44270	840 bp downstream
Tssr44271	transcription start site region 44271	862 bp downstream
Tssr44272	transcription start site region 44272	996 bp downstream