rs52428823 SNP Detail

Summary

• ID
  rs52428823
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6338996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTTCAA CAGAGTGAAG
  GAGGCAGCAC TCAGGAAGGG ACTATTTGGC TGTGTAGAGT CTACGTGGGC AGGTATGTGT
  TGTTTTCACT TTCAGCGATG GGCTTCTCAG TCCCTGTCTC TAAAGACACA CGGGTCCGCC
  ATGAAAGACT CGAAGGTTCC AGATGGCCCT GGCCAGTGTT CGGTCACGAA CTGACTAGAC
  A
  AGCAGGCTTT GGCCAGGCCC AGGCCCAGGC CCTGCCTGCC CTGCCGTGGC CCCGCCCCCG
  CCATAGTCCC ACCCCCAGTC GGCCCCGCCC CGGTGGACAG AAGCAGGAAG CGTGCGGGGC
  TCCACCGACG CCGCGGTCGC AAAGGTGCGG AGGGGACGCA GGGTGCAGGC CGGGCGCACT
  GAACTTCCTG CACAGCAGCC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss131642778	ENSMUSSNP1782490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52428823					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6338996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	within coordinates
Rr246943	regulatory region 246943	within coordinates
Tssr100241	transcription start site region 100241	65 bp upstream
Tssr100242	transcription start site region 100242	89 bp upstream
Tssr100243	transcription start site region 100243	121 bp upstream
Tssr100244	transcription start site region 100244	334 bp upstream
Tssr100245	transcription start site region 100245	432 bp upstream
Tssr100246	transcription start site region 100246	446 bp upstream
Tssr100247	transcription start site region 100247	557 bp upstream
Tssr100248	transcription start site region 100248	580 bp upstream
Zmiz2	zinc finger, MIZ-type containing 2	78 bp upstream