rs52429186 SNP Detail

Summary

• ID
  rs52429186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30086332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAAGGT TTTGATAAAG
  ATGTAAAATG TGCATCAGGT CAAGGGAGGG AAAGGAAGAG GGGAGGGGAG AGGAAAAGAG
  AGAGAGTAGT TACAGACAGT TGTACATATC TAAGCAGAAC ACGGGTTTCT CAAGAAATGA
  ATCACCAAAG AGTGTATCTA TTGAACACTG GAAAGAAAAT CAGCTCTTTT CTGATTCTTT
  Y
  CCACCTCCAG GGTTGTTTTG TTTTGCTTTT GTTTTTGTTT TGTTTTGTTG TTTTTCTGAT
  TTTTTTTTTT TGGTATGATT CAGAAAATAA TATTGGCACA GGATATCCCT CCCTATGTAT
  ACCTAGATGT ATACCTAGAT GTAATTACAA CAGTTTGTTT TAGCAAATTT CCTGCCTCCT
  TTGGCCTGTA ACAAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60382599	NES15886941	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	T	T	T	T	T	T	T	T	C
ss134728372	ENSMUSSNP6973167	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52429186					SNP	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60382599	NES15886941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30086332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574710	regulatory region 574710			1679 bp distal
Rr574711	regulatory region 574711			1474 bp distal
Rr574712	regulatory region 574712			1268 bp distal
Rr574713	regulatory region 574713			1063 bp distal
Rr574714	regulatory region 574714			858 bp distal