rs52429801 SNP Detail

Summary

• ID
  rs52429801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91054016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTTTGT TTTATATATC
  TCAATATTTT ATTCTTCCAT CGTATTGAAG GTGTCAGGAA TGCTTAAGAA ACCATGTTTC
  CTGCAGCAAC AGCTACTAGC TGGAGTCTCC CTTGTTTTTG TCAAGAAGGC ACACTTGATG
  CCTTTCAAAG TCTCTGCAGG ATTTTTCTGT CAGAGAATCC CTCTCTAACA TATTCTTTCC
  Y
  CCAAGGAACA GCTTGAGGTT CATTGCTAAT CTGAGGAATT TTTAAAAAGT GTTTTTAAAG
  CTTTCATTTA AATTATTTTT CCTAAACTTT TTATTTATTT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTTT ATAAACAGGT CTTGCTTTCC CTCCTACTGA GGTTGATTCG
  GAACTGCAGT AATGTGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61198236	NES16702763	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52429801					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198236	NES16702763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91054016 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	219 bp downstream
Tssr47229	transcription start site region 47229	1999 bp downstream
Tssr47230	transcription start site region 47230	1974 bp downstream
Tssr47231	transcription start site region 47231	1944 bp downstream
Tssr47232	transcription start site region 47232	1797 bp downstream
Tssr47233	transcription start site region 47233	1747 bp downstream
Tssr47234	transcription start site region 47234	1712 bp downstream
Tssr47235	transcription start site region 47235	954 bp downstream
Tssr47236	transcription start site region 47236	915 bp downstream
Tssr47237	transcription start site region 47237	895 bp downstream
Tssr47238	transcription start site region 47238	836 bp downstream
Tssr47239	transcription start site region 47239	831 bp downstream
Tssr47240	transcription start site region 47240	812 bp downstream
Tssr47241	transcription start site region 47241	783 bp downstream
Tssr47242	transcription start site region 47242	758 bp downstream
Tssr47243	transcription start site region 47243	740 bp downstream
Tssr47244	transcription start site region 47244	701 bp downstream
Tssr47245	transcription start site region 47245	684 bp downstream
Tssr47246	transcription start site region 47246	630 bp downstream
Tssr47247	transcription start site region 47247	576 bp downstream
Tssr47248	transcription start site region 47248	517 bp downstream
Tssr47249	transcription start site region 47249	456 bp downstream
Tssr47250	transcription start site region 47250	318 bp downstream
Tssr47251	transcription start site region 47251	253 bp downstream
Tssr47252	transcription start site region 47252	201 bp downstream
Tssr51812	transcription start site region 51812	1930 bp upstream
Tssr51813	transcription start site region 51813	1913 bp upstream
Tssr51814	transcription start site region 51814	939 bp upstream
Tssr51815	transcription start site region 51815	893 bp upstream
Tssr51816	transcription start site region 51816	860 bp upstream