rs52431726 SNP Detail

Summary

• ID
  rs52431726
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGGTT CACCACCACC
  AGAAACACAC TTGATTTTAC ATACTAAAGA GACAGTGAGA ATTCCAGGAA GGTAATTTGT
  ACCTGACAAT CAGCAGGACC AAGAGGACAG ACAGCATGTT CAAAAATGGG GTTGAAAGCT
  TATGAAAACA AAACAAAAAA AACAAAAACA AAAAACAAAA CAAAACAAAA AACCTTGTTT
  C
  CTGCTCTGAG ACAAAGAGTA CTACTGCCCA CATAAATACT TCACTTTTTA AACTTCAAGC
  AAAGGCAAAC ACATACCACA GTATTTCTGT GAGCTTTACT AGTTTCTAAA ACGGTCGTGT
  GCTGTAATAT AGTGAGTCAG AAAGAGGAAG TTAAAAGGCT AAAAAAATTA AAAAAAAAAA
  AAAAAGGCGA CTACTTCTTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148941525	ENSMUSSNP2425258	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss319691771	CHEV_1_37531541	CHEVERUD	SCREENING_POP	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs52431726					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513777 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	within coordinates
Rr409535	regulatory region 409535	993 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	759 bp downstream