rs52433443 SNP Detail

Summary

• ID
  rs52433443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116389618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTAGGGT ATCTTATCGC
  ACAGATGAAT GCAAACTTGC CACACTAACC ACAGGCGATC TGATTTTTCC CTCTTTTACT
  AATAACTTTT TAGTTGTTAG TTTCTGTGAA CATTACATTT TCTCATTTGC TAAATTGATT
  TAATATGTCT AGCTGTTCAT TTGATTGCAA TGAAGACCAG GTGTGAAAAT GTTTGTAGAA
  W
  CTAAACGGTG AAAAAAATGT TGAATTAAAA AACAACAAAA ACAAAAAGAA GACACTGATG
  TATTGAGTCG CTGGACTGTT AAACTGTGGT ATGCGATTTA AAATTAGGTC CAGAATCAAC
  CAGCAAAGCA GTCAGAAAAA TGGACTTAAA ACATCAGCCG TATATAGGAA TCTGTAGGTT
  ATTTAATTGT CTTATTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60436757	NES15940870	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs52433443					SNP	A	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436757	NES15940870	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116389618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	437 bp distal
Rr397965	regulatory region 397965	905 bp downstream
Rr583746	regulatory region 583746	1498 bp distal
Rr583747	regulatory region 583747	1201 bp distal
Rr583748	regulatory region 583748	949 bp distal
Rr583749	regulatory region 583749	124 bp distal
Rr583750	regulatory region 583750	759 bp distal
Sass6	SAS-6 centriolar assembly protein	within coordinates
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	938 bp downstream
Tssr35316	transcription start site region 35316	1128 bp upstream
Tssr35317	transcription start site region 35317	1071 bp upstream