rs52434634 SNP Detail

Summary

• ID
  rs52434634
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGAGAC TTGTTGGATA
  GGGCAAAGTG CCAATCTAAG ATTGCCCCAT GCTGTGGCCC TGGTTCTGAC TCATTCTATC
  TTGAGGGATG GGTGTGGCTA GCTGTGCTGG TGCCTGGGAG GGAAGTTCCT GTTTTGGCTT
  CAGTACAGAA GAGATGAATG GCCATAAGTT TCTAGCCTAT AGACCTCCCC TGGTGCGTCG
  C
  GCGCGCGCGC GCGCGCGCGC ACACACACAC ACACACACAC ACACACTTTA GGAGATTGAA
  TTTCAGATAG GATAATCCCA GATTGGTAGA AGGTAAAGCT GGGGGCAGAT TGGCAGGAGG
  ATTTATGTGC CGGTGACCTC CCACCCCCCA CCAGCTGCTC TCAGATGCAG AGATTTGGGG
  GGAAGGAAGG CTGAGCAGGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135505513	ENSMUSSNP6972341	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52434634					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390424 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	827 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1957 bp proximal
Gm65215	predicted gene, 65215	223 bp downstream
Gm65218	predicted gene, 65218	1313 bp downstream
Rr580638	regulatory region 580638	2 bp distal
Rr580639	regulatory region 580639	191 bp proximal
Rr580640	regulatory region 580640	1092 bp proximal
Rr580641	regulatory region 580641	1845 bp proximal
Tssr30454	transcription start site region 30454	1207 bp upstream
Tssr30455	transcription start site region 30455	1221 bp upstream
Tssr30456	transcription start site region 30456	1252 bp upstream
Tssr34391	transcription start site region 34391	1098 bp downstream