rs52435435 SNP Detail

Summary

• ID
  rs52435435
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:46118045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTGCTAGCCG CTCCTGCTCC CAGAGGGGGT CCCGAGCCGG
  GAGGCTGGAG CCGGGCACTA GTGTATGTAC ACACAGTCAC ACATACACTC GCGCGCGCGC
  G
  TGCACACACA CACACACACA CACACACACA CACACCACGA CGCGTCGGTT TCCTTCGCTC
  CTCTTCCAGC TGTTTTCCGT GCAGCCCATT GAGACTGGGG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148968802	ENSMUSSNP852879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52435435					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46118045 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5033430I15Rik	RIKEN cDNA 5033430I15 gene			655 bp upstream
Atxn1	ataxin 1			Intron
				Noncoding-Transcript-Variant
Gm56575	predicted gene, 56575			710 bp downstream
Rr403752	regulatory region 403752			330 bp upstream
Rr478835	regulatory region 478835			378 bp proximal
Rr478836	regulatory region 478836			735 bp proximal
Rr478837	regulatory region 478837			1652 bp proximal
Rr478838	regulatory region 478838			1717 bp proximal
Tssr119584	transcription start site region 119584			642 bp upstream
Tssr119585	transcription start site region 119585			886 bp upstream
Tssr122339	transcription start site region 122339			850 bp upstream
Tssr122340	transcription start site region 122340			395 bp downstream
Tssr122341	transcription start site region 122341			1710 bp downstream