rs52435638 SNP Detail

Summary

• ID
  rs52435638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTTAAA ATCATTCCTA
  ACTAGGGATT AATCCACTCT TATATGAGTC TTCATTTCCC AGCTAGCCTT GATCTGTACA
  CGTGCCCCTT TTCTTCCTCT GAGTACAGTA ACTGCGGCTA GGTCCAATAC AAAACCAAAC
  AAAAACAAAA CAAAGACAAC AAATAAAAAA CAACACTAGC CAAAATAGCA AGACCAGAAC
  W
  CGAGGCTAGA GGGGAATTGT ACCAACACAA ACATCCTCAG AAACTGAGCA TTCACGGTCT
  GGCCGCAGAA ATCCCCGCCA TTCACAACCA ACCTGGGATG GGTTTATGAT GCCAGCTACA
  TGGAAGGCTG AGGCAGGAGG ATTCTAAATT TAAGGCCAGC TGGGGCAACT GACTGAGACC
  CTATCTCACA ATAAAAAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716393	ENSMUSSNP2943542	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss323830209	CHEV_11_99853747	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52435638					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1108 bp proximal
Krtap17-1	keratin associated protein 17-1	801 bp downstream
Tssr110721	transcription start site region 110721	1559 bp downstream