rs52438101 SNP Detail

Summary

• ID
  rs52438101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26139784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAGAAA CATCCACTGG
  TGTTAAGTTC CAGGTTGGTG ATCTTGTTTG GTCCAAGGTG GGAACCTACC CTTGGTGGCC
  TTGTATGGTT TCAAGTGATC CCCAGCTTGA GGTCCATTCC AAAATTAACA CAAGAGGTAA
  GAAAAGTAAT AAATAGATAT TAAATAACAA GTTTGCAATA AAGCAAAGTG AACATTCAAT
  R
  TTATATGTGA ATGTAAGAAT ATACAAATAT ATATTATCTG GCATAAAAAT ATGAATATCA
  GATTTTTGTT TCTTCTTGTG ATGTGTTTTT GATACAGGGT TACTTATTGT ATTCAACATT
  GACCTTGACC ATGCAGCAAT CCTCCTGCCT CTGCTCCTCA GGATTTCCTC AGTTTTTAGT
  GACAAATGAA ATAATTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582755	NES16331116	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52438101					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582755	NES16331116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26139784 () rs orientation: forward

Symbol	Name	Function Class
Nsd3	nuclear receptor binding SET domain protein 3	within coordinates
Tssr76701	transcription start site region 76701	353 bp downstream