rs52438460 SNP Detail

Summary

• ID
  rs52438460
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCACGGGCT GCCCACCCAC CCCAGTGTCT TGATTCTTAG
  CACCCACAGG GTAGATCACA CGCCCCTTTA ACTCCAGTTC CTCTCTTTTG TCTATCGTGG
  G
  CTTTAGGAGC CCGTGTGCTG CGCTTACATA CATACAAGCA AAATATTCAT ACACATAATT
  AATATAAATA ATAAATAAAA ACTAAGAGAT TCTGGCTGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148681206	ENSMUSSNP1195669	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52438460					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214294 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	253 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1467 bp downstream
Tssr2186	transcription start site region 2186	360 bp upstream
Tssr65778	transcription start site region 65778	276 bp upstream