rs52438530 SNP Detail

Summary

• ID
  rs52438530
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:27299280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTATCTC AATGGTCTTG
  TCAGAGGTTC TTTGTCTCAA AATGTTAAGT CGGGGCTTTT TTTTTTTTTT TTTTTTTTTT
  TAAACCTTAC AGCAGGTCCT CTGTGAATGT ACTATGGCTT CTGGTCTTGA GGTTTTATAT
  GATTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTGTGT
  G
  TGTGTGTGTG TGTGTGTGTG TGTAGATGTT CATGTGTCTC TGGGTCTATA TGTGTTTCTT
  GTTCTTTTTC TCCTGCTCTT TTTCTTCTTG GTCACTGTGT CATACTCTGA TTTGTTTGAT
  TTATTTTTAT TTTCTTATCA TTTCTTAGAT GCTTATTTTT TCCCCCTTAG GGAAAGACAG
  AAAGGGTGTG AATTTGAATG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146307222	ENSMUSSNP4307637	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52438530					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:27299280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10724	CpG island 10724	1125 bp proximal
Gm35268	predicted gene, 35268	151 bp downstream
Gm50114	predicted gene, 50114	within coordinates
Kcnv2	potassium channel, subfamily V, member 2	708 bp upstream
Rr545853	regulatory region 545853	1748 bp proximal
Tssr5470	transcription start site region 5470	720 bp upstream
Tssr155737	transcription start site region 155737	117 bp downstream
Tssr155738	transcription start site region 155738	638 bp upstream
Tssr155739	transcription start site region 155739	659 bp upstream
Tssr155740	transcription start site region 155740	729 bp upstream