rs52438933 SNP Detail

Summary

• ID
  rs52438933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78633481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC TTCGCACTAA GCACCTATAA
  Y
  CCTCTGAGTC ACCTTGCCAG TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144751833	ENSMUSSNP6019933	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319804025	CHEV_1_78652339	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52438933					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78633481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi461	CpG island 461	1730 bp proximal
Gm69507	predicted gene, 69507	1714 bp downstream
Rr371565	regulatory region 371565	64 bp downstream
Rr396121	regulatory region 396121	1933 bp upstream
Rr413771	regulatory region 413771	928 bp proximal
Rr413772	regulatory region 413772	1571 bp proximal