rs52440386 SNP Detail

Summary

• ID
  rs52440386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98886119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGACTCG GTCTTCTGCA
  GGGAAAGAAT AAAAGCAAAC AAAACCAAAA CTCACTGCAC ACATGAAAAC ATTTGACAGA
  CGACACGTGC CCATAAACGG GGTTTCAAAA GTTTATTTGT TGTATCTGGT GTCAAATACC
  TGTATGCACT GGCACTAGGG AGGCTGCACT GCAGATTAGC CTAGGCTGCA TGGCAAGATC
  Y
  TGAAACCAAA GAAAACAACC CAAACCAAAG GAAAACCAAA ACAATACAGC AACAACAAAT
  CTCCCTTTCC ATACATTATC TACTTTGGAA GAAATGCCCT CAATCTGTAA ATTATAGTCT
  CGCCTCCTTA ACTCCAAACA AGTGAAGCAA ATAATTTCTC TTTTTGGAGC CTATCTCATC
  TTCTCATCTG TAAAATGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61685132	NES17645801	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52440386					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685132	NES17645801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98886119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	548 bp proximal
Rr403444	regulatory region 403444	357 bp upstream
Rr470976	regulatory region 470976	224 bp proximal
Rr470977	regulatory region 470977	550 bp proximal
Rr470978	regulatory region 470978	1916 bp proximal
Tssr114655	transcription start site region 114655	671 bp upstream
Tssr114656	transcription start site region 114656	707 bp upstream
Tssr114657	transcription start site region 114657	760 bp upstream
Tssr114658	transcription start site region 114658	784 bp upstream
Ttc8	tetratricopeptide repeat domain 8	714 bp upstream