rs52440572 SNP Detail

Summary

• ID
  rs52440572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134243498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GACACCCTTG GCCTTAGGCA CAAGTACTCA TATGTGTATA
  CCGATACTCA GACACAGACA CACACATGCA AAATGCCCAC ACACACACAC ACACACACAC
  R
  CACGCACAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGT AAAATATGTG
  AAAATATGTG ATATTATAGA AAAGATTCAA CTTCCTTTGT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147631968	ENSMUSSNP6900723	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52440572					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134243498 () rs orientation: forward

Symbol	Name	Function Class
Gm54132	predicted gene, 54132	811 bp downstream
Rr565659	regulatory region 565659	1740 bp distal