rs52441811 SNP Detail

Summary

• ID
  rs52441811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54570364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGACACAAAA GGAAGCCTGA GAACAATTTT ATTATAATTT
  GGGAGAAAAA CAACATGGCA GGTAAGGTTA AAAAATATAT ATAATATTAT ATACATATAT
  R
  TATATATATA AATATGTATA TGTGTATGTG TATATATATA TATATATATA TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTC TGTGTGTCTG TGTGTCTGTG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss136506929	ENSMUSSNP4979779	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52441811					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54570364 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	1210 bp upstream
Gm39341	predicted gene, 39341	1268 bp downstream
Rr204171	regulatory region 204171	1227 bp proximal
Rr206444	regulatory region 206444	1163 bp distal
Tssr89653	transcription start site region 89653	1364 bp upstream
Tssr89654	transcription start site region 89654	1225 bp upstream
Tssr89655	transcription start site region 89655	1168 bp upstream