rs52441985 SNP Detail

Summary

• ID
  rs52441985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5642098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAAACT TTTCATTGTA
  TTTTGTTTCA GAAATTACCC AGAGCATCAG AGTTCTGTGC ATGACACATG GACAGCATAA
  AGGAGGCGGT AATAAGAACC TCAGAATCAT GCACTCAGTA CAATTCTGAT TCTTTGTTTT
  TTGTTTTTTA AATAATGTGT GTTTTTAAAA AAACAAAACA AACAAAAAAA CCTTAGTATC
  Y
  GGAGTATATT AAAGGAGAAC TTGGGAGCAA AATTGGGTGG AAGACAAAGA AAGCAAACAA
  ATCCCTTTTT AACAAGTAAC CTGACAGTGT AGAAAACACT GTAGGAGGAG CTCCAGTTTG
  CTACAGTAGG TATGGAATAC AGATAGGGAC TGCAGGGATG TGTCTAGAGA TGCACCAGTA
  TACCCACCCC ATGGTGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134543007	ENSMUSSNP2446970	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320638402	CHEV_3_5577038	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52441985					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5642098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	274 bp distal
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	921 bp distal
Rr573199	regulatory region 573199	309 bp distal
Rr573200	regulatory region 573200	644 bp distal
Rr573201	regulatory region 573201	515 bp distal
Tssr28281	transcription start site region 28281	1125 bp downstream
Tssr32526	transcription start site region 32526	928 bp upstream
Tssr32527	transcription start site region 32527	876 bp upstream
Tssr32528	transcription start site region 32528	855 bp upstream
Tssr32529	transcription start site region 32529	807 bp upstream
Tssr32530	transcription start site region 32530	794 bp upstream