rs52442184 SNP Detail

Summary

• ID
  rs52442184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12849675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATATCTG AAATATATAA
  AGAATTGTAA AAATTAAATA CTCCAAGCTA AATTATCCAA TTAATAAATG GGCTAATGAA
  CTGTCTGCTC TTCCAGGGGA CCGGAGTGTG ATCTCCAGCT CCTACATGGA AAAAAATAAA
  CAGAAATAAA AAAGAAAAAG AAGAAATCTC AAATTAAAAA AACCAAATTT TTTAGAACTT
  Y
  ATTTATTTTC CCACTCATGA TTCTCATGAA GTTTAGAAAA TGAATGGAAG ACATTATATT
  ATTTTGGAGT TGGTTAAATT TCACCCTTGT CTACAGTTCT GGAAATTATA CCATTTTAAA
  TTTTAACAAA ATTTTAACAA AAGTTTCAAT AAATGAAAAC ATTCTCTTGG TGTATTTGCA
  CATTGTAAGA GGTGTAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806582	ENSMUSSNP6975991	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52442184					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12849675 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	874 bp upstream
Tssr92373	transcription start site region 92373	1772 bp upstream
Tssr96740	transcription start site region 96740	751 bp downstream
Tssr96741	transcription start site region 96741	1664 bp downstream