rs52442511 SNP Detail

Summary

• ID
  rs52442511
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165667822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAGAGAGGGA GGGAGAGAGA AGGAAAGGAA AAGGAGGGAG
  GGAAATAAGG GTCTAAATTC TCACACTTGC ACATGCTCGC TCACGTATGC ACACACTCAC
  W
  CACGTATGCA CACACTCACA TACGTATACA ATAAAGGGCC ACTCTGGATT CTGGAAGCTG
  CTTGTGTGGT CTTTCTATTT TACAGCATGA TGAAGTTTTC T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148245289	ENSMUSSNP901176	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52442511					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165667822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr570021	regulatory region 570021			within coordinates
Rr570022	regulatory region 570022			212 bp proximal
Zmynd8	zinc finger, MYND-type containing 8			Intron
				Noncoding-Transcript-Variant