rs52442516 SNP Detail

Summary

• ID
  rs52442516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:23772735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGTGAG CCTGTGAGCC
  TGTGAGCCTG TGAGTGTCAG AGCACCTATG ATCCTGTGAT CCTGTGATCC TGTGATCCTG
  TGAGCCTGTG AGCCTGTGAG TGTCAGAGCA CCTGTGAGCC TGTGAGCCTG TGAGCCTGTG
  AGCCTGTGAG CCTGTGAGTG TCAGAGCACC TGTGATCCTG TGAGCCTTGG CATTTCAGAG
  S
  ACCTGGGAGT CGGGATCCCT CTGGGTGTTA TGGGCCTGGG TGCGGAGCTA GCACCCCAGG
  TCTACTCAGG ACACAAGCTC AGACAGGAAA GATTCCATGC CACTGGCTGG GCCAGGGTTC
  ATGTGTCCCC TGGATCCTGG GAGTCCCAGT TACTCCTGGT TTGAGGGCAA ATGTTGTGGC
  TGAATAATTG TCTATGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148586181	ENSMUSSNP3090753	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52442516					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:23772735 () rs orientation: forward

Symbol	Name	Function Class
Gm36694	predicted gene, 36694	within coordinates
Gm44943	predicted gene 44943	605 bp upstream