rs52443040 SNP Detail

Summary

• ID
  rs52443040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27388524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AATGGTCTTC ACAATGCATT CGTCGAAACC GCTTTAAATA
  TTGTTAAAAG CGCATTCAAG CGCCTTTCCT GAGTTCTAAC TGGGATTTAA AAAAAAAAAA
  R
  AAAAAAAAAA AAGAAAGAAA GAAAAGATTT CTTTTTTTCC TGATCTCCAA CCAAGAACTG
  TCTCTTCTTT TCCTACCAAG AAACTCGGCC ACATAATTTT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137464433	ENSMUSSNP2576309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52443040					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27388524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	222 bp proximal
Rr464225	regulatory region 464225	1230 bp distal
Rr464226	regulatory region 464226	within coordinates
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113044	transcription start site region 113044	838 bp upstream
Tssr115966	transcription start site region 115966	1958 bp upstream
Tssr115967	transcription start site region 115967	1688 bp upstream
Tssr115968	transcription start site region 115968	1674 bp upstream
Tssr115969	transcription start site region 115969	1593 bp upstream
Tssr115970	transcription start site region 115970	1558 bp upstream
Tssr115971	transcription start site region 115971	1502 bp upstream
Tssr115972	transcription start site region 115972	1389 bp upstream
Tssr115973	transcription start site region 115973	1027 bp upstream
Tssr115974	transcription start site region 115974	970 bp upstream
Tssr115975	transcription start site region 115975	939 bp upstream
Tssr115976	transcription start site region 115976	919 bp upstream
Tssr115977	transcription start site region 115977	901 bp upstream
Tssr115978	transcription start site region 115978	275 bp upstream
Tssr115979	transcription start site region 115979	185 bp upstream
Tssr115980	transcription start site region 115980	7 bp upstream
Tssr115981	transcription start site region 115981	658 bp downstream
Tssr115982	transcription start site region 115982	881 bp downstream
Tssr115983	transcription start site region 115983	1659 bp downstream
Tssr115984	transcription start site region 115984	1674 bp downstream
Tssr115985	transcription start site region 115985	1732 bp downstream
Tssr115986	transcription start site region 115986	1748 bp downstream
Tssr115987	transcription start site region 115987	1769 bp downstream
Tssr115988	transcription start site region 115988	1796 bp downstream
Tssr115989	transcription start site region 115989	1844 bp downstream
Tssr115990	transcription start site region 115990	1915 bp downstream