rs52443692 SNP Detail

Summary

• ID
  rs52443692
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGGTACC TGATAATGGG ACCCTGCACC CCCCAAAGGG
  ATACTGACCC AAGGGGTTGA GTACCACTGT GCTAGGTTTT TGGTTTGTTG GGTTTTTTTT
  K
  GGGGGGGGAG GGGTGTCTGT TTTTGTTGGG TTTTTTGTTG TTGTTTTTCG AGACAGGATT
  TCTGTGTGTG GTCCTGGCTG TCCTGGAACT CACTCTGTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137298232	ENSMUSSNP1091424	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52443692					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425093 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1460 bp upstream
Cpgi4477	CpG island 4477	885 bp distal
Gm49586	predicted gene, 49586	746 bp downstream
Rr463712	regulatory region 463712	1653 bp distal
Rr463713	regulatory region 463713	1409 bp distal
Rr463714	regulatory region 463714	1528 bp distal
Rr463715	regulatory region 463715	368 bp distal
Rr463716	regulatory region 463716	1348 bp distal
Rr463717	regulatory region 463717	860 bp distal
Tssr112932	transcription start site region 112932	1313 bp downstream
Tssr112933	transcription start site region 112933	835 bp downstream
Tssr115856	transcription start site region 115856	1600 bp upstream
Tssr115857	transcription start site region 115857	1574 bp upstream
Tssr115858	transcription start site region 115858	1546 bp upstream
Tssr115859	transcription start site region 115859	1500 bp upstream
Tssr115860	transcription start site region 115860	1475 bp upstream