rs52444440 SNP Detail

Summary

• ID
  rs52444440
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:98504537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACACAACAG TCAAAATGTA ATAAATGTTC TATAAAGAAG
  AGAAGGAAGG GTGGGAGCGG GGAGGAAGGA GGAGAGAAAG AAGGAGAGCC AAACACATGG
  K
  GAAAAGCAAG GCCCCTCGCT GCTAACCTCA TCTTCTGCTT CTGGTTCTCG GTCTTTCCAG
  TGGTACTCTA ACAGCTAGCT AAACCCTGAT ACGCATATAT C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134254108	ENSMUSSNP5801782	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52444440					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:98504537 () rs orientation: forward

Symbol	Name	Function Class
Gm14808	predicted gene 14808	within coordinates
Rr8878	regulatory region 8878	1336 bp distal
Tssr5651	transcription start site region 5651	1870 bp downstream