rs52444725 SNP Detail

Summary

• ID
  rs52444725
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104894307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGCCCT TGACTAATTC TGTAAAGAAC TGAAAAATGT
  AGAAACCGTT CCAAGAACAA ACCTCAGTTG TGTTCTTAAT AAGAGATTTA AAAAAAAAAG
  A
  AAAACAAAAA AGAAAAACCA AACCAAACAA ACAAACAAAC CAAAGGCAGA TGGCTTCTGC
  CAAGGTTCAA TATTCCAGAA TGCCACAGCA GCACATATG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323172141	CHEV_9_104919438	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52444725					SNP	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss136905040	ENSMUSSNP4627487	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104894307 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Tssr86830	transcription start site region 86830	1260 bp upstream
Tssr86831	transcription start site region 86831	1292 bp upstream