rs52445368 SNP Detail

Summary

• ID
  rs52445368
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29151218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GCCTACAGAC GAGAGCTCCG CCTACAGACG AGAGCTCCGC
  CTACAGACGA CTCTCCTGAT TCTGAGGGCT CCAAAGCACC TCACAGATGC TTGCTTGCTT
  G
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCCTTTTTT
  TGTTTTGAGG CTCTGTTTCA ACCTGAGTGG CTCCCTCCAC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145425709	ENSMUSSNP3686512	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52445368					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29151218 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Pxt1	peroxisomal, testis specific 1	1742 bp downstream
Rr392487	regulatory region 392487	797 bp downstream
Rr524716	regulatory region 524716	1616 bp distal
Rr524717	regulatory region 524717	1691 bp distal
Rr524718	regulatory region 524718	739 bp distal
Rr524719	regulatory region 524719	972 bp distal
Rr524720	regulatory region 524720	within coordinates