rs52446181 SNP Detail

Summary

• ID
  rs52446181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127203090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACACTT GCATTTAGAT
  TTATTCACAA CCTGTATGTA ACAGAAGCAC AGCAGTGACT GGAGACCCAC TCCTGAGTCA
  AGATGCCAAT GCTATGGGAG TGACCTCATC TGCAAAAGCC ACCGACACTG CCCAAACCAC
  CTTGCAACAC ATCATCCATC TCGTGCATGC ATGCGTGTGC CTGTGCGTGA GTGTGTGCGT
  R
  TGTGTGTGTG CATACTTTAA GCAAGTCATC ACAGTATGGT TCATGGAAGG CCTCAGGGAC
  ATAACCATTA GACTTGGTGC AGCATGAAGT TCTAATCATG AGAGAGCTCA CCTATAGTCC
  AACCAAAATA CACTTACAGA CCCACACAGC AAATGGGCAG GGGGAAATAG AGAAAGCCTA
  TTTGCACTGA ATGCATTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135862668	ENSMUSSNP3492334	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52446181					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127203090 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	526 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	485 bp distal
Rr584774	regulatory region 584774	within coordinates
Tssr35571	transcription start site region 35571	554 bp upstream
Tssr35572	transcription start site region 35572	460 bp upstream
Tssr35573	transcription start site region 35573	433 bp upstream
Tssr35574	transcription start site region 35574	398 bp upstream
Tssr35575	transcription start site region 35575	377 bp upstream