rs52446797 SNP Detail

Summary

• ID
  rs52446797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70342882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAAAGC CAGCTAAGTG
  GCTCAGCTGA TAAGAACTTG CCACCAAGCT GGGCGTGGTG GTGCATGCCT TTTTAATCCC
  ACTCGGGAGG CAGAGGCAGG CGGATTTCTG AGTTCGAGGC CAGCCTGGTC TACATAGTGA
  GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTC GAAAAAAACA AAAAACAAAA
  M
  AAAACAAAAA ACAAACAAAC AAAAAAAACC CCACCAAACC ATGGTGGAAG AACACCAGCT
  CACAAACTAT CTTACCCACC CCACATGCTC AGACTCACAC CTAGGTGCAG GGTAAAATAA
  ATGGAATTTT AAACCATGGG AGGTAGGGCA CATGTGGTGC TGGCAGGTGC GTGTGCTCCT
  TCCTTGGGCT TCTACATGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145115532	ENSMUSSNP5277926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52446797					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70342882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20426	CpG island 20426	1905 bp distal
Cpgi20427	CpG island 20427	532 bp distal
Gm33746	predicted gene, 33746	1736 bp downstream
Tssr81541	transcription start site region 81541	1995 bp upstream
Yjefn3	YjeF N-terminal domain containing 3	within coordinates