rs52446990 SNP Detail

Summary

• ID
  rs52446990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90909120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA TTTATTAATT ATTAACTAGT
  Y
  TATTAGTATT ACTATTTGGG CCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148817121	ENSMUSSNP6031781	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321608250	CHEV_5_91190287	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52446990					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90909120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1448 bp distal
Cxcl5	C-X-C motif chemokine ligand 5	within coordinates
Gm72413	predicted gene, 72413	within coordinates
Rr614400	regulatory region 614400	1873 bp distal
Tssr47178	transcription start site region 47178	1894 bp downstream