rs52447576 SNP Detail

Summary

• ID
  rs52447576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167895585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTGTGTGTGC GCGCACATGT GTGTGTGTGC ACATGTGTGT
  GCATGTGTGT GTGCATGTAT GTGTGTGTGT GTGCGTGTGT GTGTGCATGT ATGCGTGTGT
  R
  TGTGCGTGTG TGTGTGTGCA TGTGCGTGTG CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TATCTGAGCA CACTGAATGC CACTGTGTGG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148265705	ENSMUSSNP6668024	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52447576					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167895585 () rs orientation: forward

Symbol	Name	Function Class
Rr570863	regulatory region 570863	593 bp distal
Rr570864	regulatory region 570864	770 bp distal
Tssr27824	transcription start site region 27824	1713 bp upstream