rs52449852 SNP Detail

Summary

• ID
  rs52449852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80596509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCA CACAGGCACA CACACAGAAG
  Y
  GCACATATGC ACAACATTCT GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147593136	ENSMUSSNP309437	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325709632	CHEV_18_80750033	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52449852					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80596509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	1599 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Tssr152111	transcription start site region 152111	1896 bp upstream
Tssr152112	transcription start site region 152112	1933 bp upstream
Tssr154031	transcription start site region 154031	1486 bp downstream